Cardiac Glycomics
In the heart, multiple cell surface glycoproteins, including calcium, potassium and sodium ion channels, work in concert to propagate electrical impulses to generate proper action potentials and subsequent contraction of the myocardium. The appropriate abundance, distribution, and post-translational modifications of these glycoproteins are required for proper function. Specifically, the glycan-moiety attached to the protein is critical for proper protein folding, stability and signaling. For example, genetic defects that impact ion channel glycosylation sites result in impaired heart function.
Despite mounting evidence that glycan structures are key modulators of heart function and must be considered when developing cardiac biomarkers, we currently do not have a comprehensive view of the glycans present in the normal human heart. Ultimately, to understand the specific biological roles of glycoproteins, it is often necessary to define the population of each molecular species that arises from combinations of site-specific glycan diversity (i.e. microheterogeneity) at multiple sites of glycosylation, as this site-specific glycosylation may promote or interfere with interactions and signaling. Moreover, in a complex organ like the heart, cell type specificity is a critical piece of the puzzle, as the context and directionality of glycan-mediated events defines, for example, how cells propagate action potentials and multiple cell types interact during human development to properly form tissues.
Hence, defining the structures produced by the human cardiomyocyte protein glycosylation pathway, for example, could provide specific targets for studying glycogenes involved in regulating cardiomyocyte development, electrophysiology, disease biomarkers, and regenerative medicine efforts. For this purpose, we have generated the first dynamic view of glycan structures within hPSC-CM differentiation cultures and human primary cardiomyocytes. These data compliment our cell surface glycoproteomics work, as the glycan libraries we are building serve as a reference for our intact glycopeptide analyses.
We use mass spectrometry to achieve detailed characterization and quantification of glycan structures, including N and O-glycans released from proteins. Chromatography using porous graphitized carbon achieves separation of structurally similar glycans with the same composition, allowing each glycan structure to be individually quantified and characterized. Normalized retention times provide the first level of information regarding glycan structure and is orthogonal to glycan detection and characterization by mass-spectrometry. Accurate masses for glycans and corresponding MS/MS spectra for each structure allow orthogonal characterization of glycan structures to normalized retention time values. Data analysis has been automated using KNIME and the Skyline platform.